Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs4263320 | chr3:100011853 | C/T | 4.46E-5 | 210 | 16.43 | 18.47 | 4.67 | KM Plot |
| KIRP | rs4264577 | chr2:100930662 | T/C | 0.000193 | 208 | 13.97 | 13.03 | 20.03 | KM Plot |
| KIRP | rs4283605 | chr3:49678651 | A/G | 0.000534 | 213 | 14.13 | 17 | 19.53 | KM Plot |
| KIRP | rs429328 | chr1:235680372 | T/G | 0.000447 | 210 | 14.53 | 16.7 | 13.17 | KM Plot |
| KIRP | rs430798 | chr14:59178823 | A/C | 6.34E-7 | 212 | 15.75 | 16.93 | 10.83 | KM Plot |
| KIRP | rs4353106 | chr1:95264470 | C/T | 1.62E-5 | 210 | 16.47 | 16.93 | 12.3 | KM Plot |
| KIRP | rs436041 | chr19:6692796 | G/C | 0.000468 | 202 | 17.6 | 13.6 | 3.87 | KM Plot |
| KIRP | rs438703 | chr19:6692790 | A/T | 0.000468 | 202 | 17.6 | 13.6 | 3.87 | KM Plot |
| KIRP | rs4405504 | chr15:24510655 | A/G | 4.13E-5 | 208 | 17.03 | 14.8 | 10.23 | KM Plot |
| KIRP | rs4409367 | chr8:30100628 | G/T | 5.69E-7 | 213 | 15.07 | 18.47 | 0.07 | KM Plot |
| KIRP | rs4413731 | chr8:30107302 | G/A | 1.07E-6 | 211 | 15.07 | 21.35 | 4.88 | KM Plot |
| KIRP | rs4417241 | chr11:34994175 | G/T | 0 | 213 | 16.43 | 17 | 0.97 | KM Plot |
| KIRP | rs4419773 | chr8:30108170 | C/A | 1.07E-6 | 211 | 15.07 | 21.35 | 4.88 | KM Plot |
| KIRP | rs4424892 | chr15:100104385 | A/G | 0.000231 | 214 | 14.03 | 20.27 | 3.87 | KM Plot |
| KIRP | rs4432021 | chr11:22332032 | A/G | 3.22E-6 | 213 | 2.52 | 20.05 | 14.87 | KM Plot |